
Under the President level, it is divided into Academic Divisions, Administrative Divisions, Affiliated Hospitals and Units.
There are 8 units below the Academic Divisions level
- College of Medicine
- College of Dental Medicine
- College of Pharmacy
- College of Nursing
- College of Health Sciences
- College of Life Sciences
- College of Humanities and Social Sciences
- Center for General Education
There are 13 units below the Administrative Divisions level
- Office of Research and Development
- Office of Academic Affairs
- Office of Student Affairs
- Office of General Affairs
- Office of Library and Information Services
- Office of Global Affairs
- Office for Operation of Industry and University Cooperation
- Auditing Office
- Office of Secretariat
- Office of Institutional Research and Sustainable Development
- Human Resources Office
- Office of Accounting
- Office of Environmental Safety and Health
There are 7 units below the Affiliated Hospitals and Units level
- KMU Chung-Ho Memorial Hospital
- KMU Gangshan Hospital
- 附設兒童醫院(籌備中)
- Kaohsiung Tatung Jianguo Day Care Institute(Affiliated with Kaohsiung Medical University)
- Kaohsiung Siaogang Shanwei Day Care Institute(Affiliated with Kaohsiung Medical University)
- Kaohsiung Municipal Siaogang Hospital
- Kaohsiung Municipal CiJin Hospital